PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G0979
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 333aa    MW: 36567.9 Da    PI: 7.2867
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G0979genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18248281134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C++C  t+Tp+WR+gp g+ktLCnaCG++yr+ +
  Gh_D05G0979 248 CTHCEITETPQWREGPMGPKTLCNACGVRYRSGR 281
                  *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-17242292IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.332246278IPR000679Zinc finger, GATA-type
CDDcd002021.32E-14247294No hitNo description
SuperFamilySSF577167.6E-15247305No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14247279IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.1E-16248281IPR000679Zinc finger, GATA-type
PROSITE patternPS003440248273IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MSKSWFDKGY NGVGPNDDFF DDVIKYLDLP LEDVEGPDGN GSTEDVNNFL LPVEENNDGG  60
EDWDCDFENL EPPPTNVLAS LSSGFYGDFF SDSLAQNFTD SCDGSSQLNQ LSSTTSITPH  120
SNCTDVKGST WFQTSSPVSV LESSSSCSAA NPTPIDPKLS FLVKKRGRSK RRPASTFNQQ  180
FIFPSISSTS SASRGTNYVV GSESESENNP TEKPAKKRQK KKKNLTLLSG CNETKKPPSL  240
QPIVIMKCTH CEITETPQWR EGPMGPKTLC NACGVRYRSG RLFPEYRPAA SPTFVASMHS  300
NSHKKVVEMR KKAKLPLSLS LSLSSIPPKM SFR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.226290.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443598.10.0PREDICTED: GATA transcription factor 11-like
TrEMBLA0A0D2THJ00.0A0A0D2THJ0_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.22e-42GATA transcription factor 10